PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 414aa    MW: 44956.7 Da    PI: 8.6485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-114671126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG +C+F+H+
  XP_011085488.1 46 PGEPDCIYYLRTGSCGYGTSCRFNHP 71
                    5789*********************8 PP

2zf-CCCH375.8e-1296120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tGtCkyG++Ck++H++
  XP_011085488.1  96 QPDCGYYLKTGTCKYGSTCKYHHPK 120
                     789********************96 PP

3zf-CCCH33.57e-11139163327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     t+ C++++rtG CkyG  CkF+H++
  XP_011085488.1 139 TRSCPYYMRTGLCKYGYACKFHHPQ 163
                     899********************97 PP

4zf-CCCH34.73e-11265290227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+  G CkyG  Ck++H++
  XP_011085488.1 265 DQPECRYFMIHGSCKYGLDCKYHHPK 290
                     689*********************96 PP

5zf-CCCH35.51.7e-11310335126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++ +G CkyG++CkF H+
  XP_011085488.1 310 PGQPICSYYSLYGLCKYGPTCKFDHP 335
                     5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8454573IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6893121IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-593120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-698121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-499120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7134164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249136164IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5136163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5139162IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497263291IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6266293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4269291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6308335IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699309337IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4314334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MPGNRKLQRN GSVPDKVEEV MRRLKVEESD DNGRVGDDPG AYPDRPGEPD CIYYLRTGSC  60
GYGTSCRFNH PSNAGQVNTI VYGVKNTSEL PERAGQPDCG YYLKTGTCKY GSTCKYHHPK  120
DRQADVLMNL VGLPMRQNTR SCPYYMRTGL CKYGYACKFH HPQPATTTNV LPVIGPVYGS  180
GGSTGAPSPG APSIGDPSTT PLSKATYFSN SLLQLPQNYI PLFLSPSQGW NTYMGSVAPL  240
SVTSVLTTPA SNGQLSASYL PERPDQPECR YFMIHGSCKY GLDCKYHHPK EKISQVASSS  300
LGPLGLPLRP GQPICSYYSL YGLCKYGPTC KFDHPLDGYS YAYSLAVPPL AAAYSSTTPY  360
QRATPLVPLS ETSLAKPSRV SDCIKKGETT GNKNQQPKTK NVGDSPNPSD SLPH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085488.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A022RSU51e-177A0A022RSU5_ERYGU; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-87C3H family protein